{
  "_id": "6ac0b4c591601a2ad2997a4d",
  "Package": "pedgene",
  "Type": "Package",
  "Title": "Gene-Level Variant Association Tests for Pedigree Data",
  "Version": "4.1",
  "Date": "2025-09-08",
  "Authors@R": "c(person(\"Schaid\", \"Daniel\", role=\"aut\"), person(\"Visconti\", \"Alessia\", role=\"ctb\"),\nperson(\"Jason\", \"Sinnwell\", email=\"sinnwell.jason@mayo.edu\",role=c(\"aut\",\"cre\")))",
  "Description": "Gene-level variant association tests with disease status\nfor pedigree data: kernel and burden association statistics.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "URL": "https://cran.r-project.org/package=pedgene",
  "Packaged": {
    "Date": "2026-10-03 07:50:01 UTC",
    "User": "root"
  },
  "Author": "Schaid Daniel [aut], Visconti Alessia [ctb], Jason Sinnwell\n[aut, cre]",
  "Maintainer": "Jason Sinnwell <sinnwell.jason@mayo.edu>",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://sinnweja.r-universe.dev",
  "Date/Publication": "2025-09-08 18:40:12 UTC",
  "RemoteUrl": "https://github.com/cran/pedgene",
  "RemoteRef": "HEAD",
  "RemoteSha": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
  "_user": "sinnweja",
  "_type": "src",
  "_file": "pedgene_4.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/691eeb6e846d3dd2c86a6101a514e7abb549524c95d97829b11be13931b1421a",
  "_filesize": 234964,
  "_sha256": "691eeb6e846d3dd2c86a6101a514e7abb549524c95d97829b11be13931b1421a",
  "_expires": "2027-01-11T07:54:43.000Z",
  "_created": "2026-10-03T07:50:01.000Z",
  "_published": "2026-10-03T07:54:45.737Z",
  "_jobs": [
    {
      "job": 111159302737,
      "time": 240,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11267619693"
    },
    {
      "job": 111159302796,
      "time": 211,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11268592060"
    },
    {
      "job": 111159302731,
      "time": 158,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11268342404"
    },
    {
      "job": 111159302729,
      "time": 199,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11267249894"
    },
    {
      "job": 111158639723,
      "time": 252,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11268891027"
    },
    {
      "job": 111159302727,
      "time": 138,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11267174848"
    },
    {
      "job": 111159302829,
      "time": 148,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11268921172"
    },
    {
      "job": 111159302752,
      "time": 165,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11268492055"
    },
    {
      "job": 111159302726,
      "time": 169,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11267274945"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272",
  "_status": "success",
  "_upstream": "https://github.com/cran/pedgene",
  "_commit": {
    "id": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
    "author": "Jason Sinnwell <sinnwell.jason@mayo.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 4.1\n",
    "time": 1757356812
  },
  "_maintainer": {
    "name": "Jason Sinnwell",
    "email": "sinnwell.jason@mayo.edu",
    "login": "sinnweja",
    "description": "Statistician/Programmer working in cancer genomics",
    "uuid": 8126016
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "CompQuadForm",
      "role": "Depends"
    },
    {
      "package": "survey",
      "role": "Depends"
    },
    {
      "package": "Pedixplorer",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sinnweja",
      "count": 10,
      "uuid": 8126016
    },
    {
      "user": "schaid",
      "count": 2,
      "uuid": 67925451
    }
  ],
  "_userbio": {
    "uuid": 8126016,
    "type": "user",
    "name": "Jason Sinnwell",
    "followers": 25,
    "description": "Statistician/Programmer working in cancer genomics"
  },
  "_downloads": {
    "count": 395,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pedgene"
  },
  "_mentions": 2,
  "_searchresults": 9,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pedgene.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_realowner": "sinnweja",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1",
      "date": "2013-11-08"
    },
    {
      "version": "1.2",
      "date": "2013-11-18"
    },
    {
      "version": "1.3",
      "date": "2013-12-03"
    },
    {
      "version": "1.4",
      "date": "2014-03-20"
    },
    {
      "version": "2.1",
      "date": "2014-06-24"
    },
    {
      "version": "2.7",
      "date": "2015-08-03"
    },
    {
      "version": "2.9",
      "date": "2015-10-09"
    },
    {
      "version": "3.1",
      "date": "2019-05-20"
    },
    {
      "version": "3.2",
      "date": "2019-05-23"
    },
    {
      "version": "3.3",
      "date": "2020-02-19"
    },
    {
      "version": "3.6",
      "date": "2022-10-18"
    },
    {
      "version": "3.8",
      "date": "2024-03-05"
    },
    {
      "version": "3.9",
      "date": "2024-04-10"
    },
    {
      "version": "4.1",
      "date": "2025-09-08"
    }
  ],
  "_exports": [
    "pedgene",
    "pedgene.stats",
    "pedigreeChecks",
    "print.pedgene",
    "quadfactor",
    "summary.pedgene"
  ],
  "_datasets": [
    {
      "name": "example.geno",
      "title": "Example datasets for pedgene",
      "object": "example.geno",
      "file": "example.geno.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "famid",
        "person",
        "AA.1",
        "AA.2",
        "AA.3",
        "AA.4",
        "AA.5",
        "AA.6",
        "AA.7",
        "AA.8",
        "AA.9",
        "AA.10",
        "AX.1",
        "AX.2",
        "AX.3",
        "AX.4",
        "AX.5",
        "AX.6",
        "AX.7",
        "AX.8",
        "AX.9",
        "AX.10"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "example.map",
      "title": "Example datasets for pedgene",
      "object": "example.map",
      "file": "example.map.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "chrom",
        "gene"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "example.ped",
      "title": "Example datasets for pedgene",
      "object": "example.ped",
      "file": "example.ped.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "famid",
        "person",
        "father",
        "mother",
        "sex",
        "trait"
      ],
      "rows": 39,
      "table": true,
      "tojson": true
    },
    {
      "name": "example.relation",
      "title": "Example datasets for pedgene",
      "object": "example.relation",
      "file": "example.relation.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "famid",
        "id1",
        "id2",
        "code"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "example.geno",
      "title": "Example datasets for pedgene",
      "topics": [
        "example.geno",
        "example.map",
        "example.ped",
        "example.relation"
      ]
    },
    {
      "page": "format_relation",
      "title": "Internal utility to format the matrix used to specify special relationships between pairs of individuals",
      "topics": [
        "format_relation"
      ]
    },
    {
      "page": "pedgene",
      "title": "Compute Kernel and Burden Statistics for Pedigree Data (possibly with unrelated subjects)",
      "topics": [
        "pedgene",
        "pedgene.stats",
        "print.pedgene",
        "summary.pedgene"
      ]
    },
    {
      "page": "pedigreeChecks",
      "title": "Validity checks on pedigree data",
      "topics": [
        "pedigreeChecks"
      ]
    },
    {
      "page": "quadfactor",
      "title": "Internal utility to calculate a constant quadratic factor for gene-level statistics variances, over all pedigrees",
      "topics": [
        "quadfactor"
      ]
    }
  ],
  "_readme": "https://github.com/cran/pedgene/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "BiocGenerics",
    "bslib",
    "cachem",
    "cellranger",
    "cli",
    "colourpicker",
    "commonmark",
    "CompQuadForm",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "data.table",
    "DBI",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "igraph",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "litedown",
    "magrittr",
    "markdown",
    "Matrix",
    "memoise",
    "mime",
    "miniUI",
    "minqa",
    "mitools",
    "numDeriv",
    "openssl",
    "otel",
    "Pedixplorer",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "prettyunits",
    "progress",
    "promises",
    "purrr",
    "quadprog",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "readxl",
    "rematch",
    "rlang",
    "rmarkdown",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "shiny",
    "shinycssloaders",
    "shinyhelper",
    "shinyjqui",
    "shinyjs",
    "shinytoastr",
    "shinyWidgets",
    "sourcetools",
    "stringi",
    "stringr",
    "survey",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "pedgene.Rnw",
      "filename": "pedgene.pdf",
      "title": "pedgene_manual",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-08",
      "modified": "2022-10-18 06:30:02",
      "commits": 6
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "pedgene",
  "_universes": [
    "sinnweja"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "4.1",
      "date": "2026-10-03T07:53:05.000Z",
      "distro": "resolute",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/001dfe5a8ec13d1a18dcbcf5373ebd4d7db38cf0b93e98d5762994d04f39ffd6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "4.1",
      "date": "2026-10-03T07:52:22.000Z",
      "distro": "resolute",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/0cab4c72bcdc89286b51bea600ee665c91c8e026f9c407a779c36e42da56c4ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "4.1",
      "date": "2026-10-03T07:51:46.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/816045e1c1184ba5b98f4e93123836e5bdcad8cd72cb3a9fecf76012068d3195",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "4.1",
      "date": "2026-10-03T07:52:13.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/6bf9bcb003c9ce21218fc76b08b51a7de5097aa339c46d3db096dd2d52b5c587",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "4.1",
      "date": "2026-10-03T07:52:39.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/4b9d1459e7624701fc9496a3b6f5766c14438e7603477452b2511f8c8dde05bb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "4.1",
      "date": "2026-10-03T07:51:23.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/2c48d97279fda33ee98c517d12a8c07c9fc13cd6e164ef8b5d335e12f481a33f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "4.1",
      "date": "2026-10-03T07:51:20.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/7cce45bd605e0bb9f3e6f15c9e38ebd19abf6533d8f3073c954d9daf234031b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "4.1",
      "date": "2026-10-03T07:51:26.000Z",
      "commit": "a2f62b6cc42474bb261b0be54092217ca7cf2305",
      "fileid": "https://r2.ropensci.org/b95a96be274611f2ec76be54dba5c4524174f3cf17cdb1f0a1f7fa713e1b152c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sinnweja/actions/runs/37107428272"
    }
  ]
}