Package: pedgene 4.1
pedgene: Gene-Level Variant Association Tests for Pedigree Data
Gene-level variant association tests with disease status for pedigree data: kernel and burden association statistics.
Authors:
pedgene_4.1.tar.gz
pedgene_4.1.zip(r-4.7-any)pedgene_4.1.zip(r-4.6-any)pedgene_4.1.zip(r-4.5-any)
pedgene_4.1.tgz(r-4.6-any)pedgene_4.1.tgz(r-4.5-any)
pedgene_4.1.tar.gz(r-4.7-any)pedgene_4.1.tar.gz(r-4.6-any)
pedgene_4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pedgene/json (API)
| # Install 'pedgene' in R: |
| install.packages('pedgene', repos = c('https://sinnweja.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- example.geno - Example datasets for pedgene
- example.map - Example datasets for pedgene
- example.ped - Example datasets for pedgene
- example.relation - Example datasets for pedgene
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:a2f62b6cc4. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 240 | ||
| source / vignettes | OK | 252 | ||
| linux-release | OK | 211 | ||
| macos-release | OK | 199 | ||
| macos-oldrel | OK | 158 | ||
| windows-devel | OK | 148 | ||
| windows-release | OK | 169 | ||
| windows-oldrel | OK | 165 | ||
| wasm-release | OK | 138 |
Exports:pedgenepedgene.statspedigreeChecksprint.pedgenequadfactorsummary.pedgene
Dependencies:askpassbase64encBiocGenericsbslibcachemcellrangerclicolourpickercommonmarkCompQuadFormcpp11crayoncrosstalkcurldata.tableDBIdigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttpuvhttrigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelitedownmagrittrmarkdownMatrixmemoisemimeminiUIminqamitoolsnumDerivopensslotelPedixplorerpillarpkgconfigplotlyplyrprettyunitsprogresspromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloreadxlrematchrlangrmarkdownS4VectorsS7sassscalesshinyshinycssloadersshinyhelpershinyjquishinyjsshinytoastrshinyWidgetssourcetoolsstringistringrsurveysurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example datasets for pedgene | example.geno example.map example.ped example.relation |
| Internal utility to format the matrix used to specify special relationships between pairs of individuals | format_relation |
| Compute Kernel and Burden Statistics for Pedigree Data (possibly with unrelated subjects) | pedgene pedgene.stats print.pedgene summary.pedgene |
| Validity checks on pedigree data | pedigreeChecks |
| Internal utility to calculate a constant quadratic factor for gene-level statistics variances, over all pedigrees | quadfactor |