Package: pedgene 3.9
pedgene: Gene-Level Variant Association Tests for Pedigree Data
Gene-level variant association tests with disease status for pedigree data: kernel and burden association statistics.
Authors:
pedgene_3.9.tar.gz
pedgene_3.9.zip(r-4.5)pedgene_3.9.zip(r-4.4)pedgene_3.9.zip(r-4.3)
pedgene_3.9.tgz(r-4.4-any)pedgene_3.9.tgz(r-4.3-any)
pedgene_3.9.tar.gz(r-4.5-noble)pedgene_3.9.tar.gz(r-4.4-noble)
pedgene_3.9.tgz(r-4.4-emscripten)pedgene_3.9.tgz(r-4.3-emscripten)
pedgene.pdf |pedgene.html✨
pedgene/json (API)
NEWS
| # Install 'pedgene' in R: |
| install.packages('pedgene', repos = c('https://sinnweja.r-universe.dev', 'https://cloud.r-project.org')) |
- example.geno - Example datasets for pedgene
- example.map - Example datasets for pedgene
- example.ped - Example datasets for pedgene
- example.relation - Example datasets for pedgene
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:d315c0514d. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | OK | Sep 08 2024 |
| R-4.5-linux | OK | Sep 08 2024 |
| R-4.4-win | OK | Sep 08 2024 |
| R-4.4-mac | OK | Sep 08 2024 |
| R-4.3-win | OK | Sep 08 2024 |
| R-4.3-mac | OK | Sep 08 2024 |
Exports:pedgenepedgene.statspedigreeChecksprint.pedgenequadfactorsummary.pedgene
Dependencies:CompQuadFormDBIevaluatehighrkinship2knitrlatticeMatrixminqamitoolsnumDerivquadprogRcppRcppArmadillosurveysurvivalxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example datasets for pedgene | example.geno example.map example.ped example.relation |
| Internal utility to format the matrix used to specify special relationships between pairs of individuals | format_relation |
| Compute Kernel and Burden Statistics for Pedigree Data (possibly with unrelated subjects) | pedgene pedgene.stats print.pedgene summary.pedgene |
| Validity checks on pedigree data | pedigreeChecks |
| Internal utility to calculate a constant quadratic factor for gene-level statistics variances, over all pedigrees | quadfactor |
